classify {nucim}

Classify DAPI

Description

Classify DAPI

Usage

classify(blue, mask, N, beta = 0.1, z = 1/3, silent = TRUE)

Arguments

blue

DAPI channel (image)

mask

mask (image)

N

number of classes

beta

smoothing parameter used in potts model (default: 0.1)

z

scaling parameter: size of voxel in X-/Y-direction divided by the size of voxel in Z-direction (slice scaling parameter: size of voxel in X-/Y-direction divided by the size of voxel in Z-direction (slice thickness))

silent

boolean. Should algorithm be silent?

Value

image with classes