nminfo {nonmem2rx}

Get the most accurate information you can get from NONMEM

Description

Get the most accurate information you can get from NONMEM

Usage

nminfo(
  file,
  mod = ".mod",
  xml = ".xml",
  ext = ".ext",
  cov = ".cov",
  phi = ".phi",
  lst = ".lst",
  useXml = TRUE,
  useExt = TRUE,
  useCov = TRUE,
  usePhi = TRUE,
  useLst = TRUE,
  strictLst = FALSE,
  verbose = FALSE
)

Arguments

file

nonmem file, like control stream, phi. This function will remove the extension to try to get the right information. It preferentially selects the most accurate estimates from the file.

mod

the NONMEM output extension, defaults to .mod

xml

the NONMEM xml file extension , defaults to .xml

ext

the NONMEM ext file extension, defaults to .ext

cov

the NONMEM covariance file extension, defaults to .cov

phi

the NONMEM eta/phi file extension, defaults to .phi

lst

the NONMEM output extension, defaults to .lst

useXml

if present, use the NONMEM xml file to import much of the NONMEM information

useExt

if present, use the NONMEM ext file to extract parameter estimates (default TRUE), otherwise defaults to parameter estimates extracted in the NONMEM output

useCov

if present, use the NONMEM cov file to import the covariance, otherwise import the covariance with list file

usePhi

if present, use the NONMEM phi file to extract etas (default TRUE), otherwise defaults to etas in the tables (if present)

useLst

if present, use the NONMEM lst file to extract NONMEM information

strictLst

The list parsing needs to be correct for a successful load (default FALSE).

verbose

this is a flag to be more verbose when reading information in, by default this is FALSE

Value

list of NONMEM information

Author(s)

Matthew L. Fidler

Examples

nminfo(system.file("mods/cpt/runODE032.res", package="nonmem2rx"))