noisyr {noisyr}

Run the noisyR pipeline

Description

Calls one of noisyr_counts or noisyr_transcript, with the specified parameters. See the individual function documentation for more details and required arguments: noisyr_counts, noisyr_transcript

Usage

noisyr(approach.for.similarity.calculation = c("counts", "transcript"), ...)

Arguments

approach.for.similarity.calculation

which approach to use for the similarity calculation; defaults to counts

...

arguments to be passed on to noisyr_counts or noisyr_transcript; see their documentation for more details and required arguments

Value

For the counts approach, the denoised expression matrix. For the transcript approach, the numeric vector of noise thresholds per sample. For more details, see their respective documentation.

Examples

noisyr(approach.for.similarity.calculation = "counts",
       expression.matrix = matrix(1:100, ncol = 5))