| nodeSub-package {nodeSub} | R Documentation |
Package providing functions to simulate sequences under different DNA evolution models
Description
Simulate DNA sequences for the node substitution model. In the node substitution model, substitutions accumulate additionally during a speciation event, providing a potential mechanistic explanation for substitution rate variation. This package provides tools to simulate such a process, simulate a reference process with only substitutions along the branches, and provides tools to infer phylogenies from alignments. More information can be found in Janzen (2021) <doi:10.1093/sysbio/syab085>.
Version History:
Version 1.2.7 - Removed beta calculation due to apTreeshape removal from
CRAN
Version 1.2.3 - Removed summary statistic tests for CRAN
Version 1.2.2 - Changed codedov links in README
Version 1.2.1 - Expanded depenency on RPANDA
Version 1.2 - Release on CRAN
Author(s)
Thijs Janzen Maintainer: Thijs Janzen <t.janzen@rug.nl>
References
Thijs Janzen, Folmer Bokma, Rampal S Etienne, Nucleotide Substitutions during Speciation may Explain Substitution Rate Variation, Systematic Biology, 2021; syab085