plot.nlmixr2FitData {nlmixr2plot}

Plot a nlmixr2 data object

Description

Plot some standard goodness of fit plots for the focei fitted object

Usage

## S3 method for class 'nlmixr2FitData'
plot(x, ...)

Arguments

x

a focei fit object

...

additional arguments (currently ignored)

Value

An nlmixr2PlotList object (a list of ggplot2 objects with easier plotting for all of them at the same time)

Author(s)

Wenping Wang & Matthew Fidler

Examples

library(nlmixr2est)
one.compartment <- function() {
  ini({
    tka <- 0.45
    tcl <- 1
    tv <- 3.45
    eta.ka ~ 0.6
    eta.cl ~ 0.3
    eta.v ~ 0.1
    add.sd <- 0.7
  })
  model({
    ka <- exp(tka + eta.ka)
    cl <- exp(tcl + eta.cl)
    v <- exp(tv + eta.v)
    d/dt(depot) = -ka * depot
    d/dt(center) = ka * depot - cl / v * center
    cp = center / v
    cp ~ add(add.sd)
  })
}

## The fit is performed by the function nlmixr/nlmix2 specifying the model, data and estimate
fit <- nlmixr2(one.compartment, theo_sd,  est="saem", saemControl(print=0, nBurn = 10, nEm = 20))

# This shows many goodness of fit plots
plot(fit)