variation {nexus}

Variation Matrix

Description

Computes the variation matrix (Aitchison 1986, definition 4.4).

Usage

variation(x, ...)

## S4 method for signature 'CompositionMatrix'
variation(x)

Arguments

x

A CompositionMatrix object.

...

Currently not used.

Value

A matrix.

Author(s)

N. Frerebeau

References

Aitchison, J. (1986). The Statistical Analysis of Compositional Data. London: Chapman and Hall, p. 64-91.

Greenacre, M. J. (2019). Compositional Data Analysis in Practice. Boca Raton: CRC Press.

See Also

Other statistics: aggregate(), covariance(), dist, mahalanobis(), margin(), mean(), metric_var(), quantile(), scale()

Examples

## Data from Aitchison 1986
data("hongite")

## Coerce to compositional data
coda <- as_composition(hongite)

## Variation matrix
## (Aitchison 1986, definition 4.4)
(varia <- variation(coda))

## Cluster dendrogram
d <- as.dist(varia)
h <- hclust(d, method = "ward.D2")
plot(h)