netmhc2pan {netmhc2pan}

netmhc2pan: predict peptide binding strengths using NetMHC2pan

Description

'NetMHCIIpan' is a tool to predict the binding strength of a short peptide to an MHC-II complex. 'NetMHCIIpan' can be used from a web server at 'https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.2/' or from the command-line, using a local installation. This package allows to call 'NetMHCIIpan' from R.

Author(s)

Richèl J.C. Bilderbeek

Examples

if (is_netmhc2pan_installed()) {

  predict_ic50(
    peptides = c("AIAACAMLLV", "ALVCYIVMPV"),
    mhc_haplotype = "DRB1_0416"
  )
}