install_netmhc2pan {netmhc2pan}

Install NetMHCIIpan

Description

Install NetMHCIIpan to a local folder, by downloading the binary and data files. Use install_netmhc2pan_from_files to install NetMHCIIpan from files that are already downloaded.

Usage

install_netmhc2pan(
  netmhc2pan_bin_url = get_netmhc2pan_bin_url(),
  netmhc2pan_data_url = get_netmhc2pan_data_url(),
  verbose = FALSE,
  netmhc2pan_archive_filename = get_netmhc2pan_archive_filename(),
  netmhc2pan_folder_name = get_default_netmhc2pan_folder(),
  temp_local_file = tempfile(pattern = "netmhc2pan_install_netmhc2pan_")
)

Arguments

netmhc2pan_bin_url

URL to download the NetMHCIIpan binary tarball file from, similar to, for example, https://www.cbs.dtu.dk/download/12345678-1234-1234-1234-123456789ABC. Use get_netmhc2pan_bin_url to get the default URL.

netmhc2pan_data_url

URL to download the NetMHCIIpan data tarball file from, similar to, for example, https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.2/data.Linux.tar.gz. Use get_netmhc2pan_data_url to get the default URL.

verbose

set to TRUE for more output

netmhc2pan_archive_filename

the NetMHC2pan archive filename, for example netMHCIIpan-3.2.Linux.tar.gz, which is used in installation of NetMHC2pan. Use get_netmhc2pan_archive_filename to get this filename.

netmhc2pan_folder_name

the folder (to be) used by NetMHCIIpan. From this location, a subfolder for NetMHCIIpan is created. Use get_default_netmhc2pan_folder to see the location of the default NetMHCIIpan folder. Use get_default_netmhc2pan_subfolder to see the location of the default NetMHCIIpan subfolder.

temp_local_file

path to the temporary file to store the URL to. This file will be deleted afterwards.

Details

These are three steps:

• Install the NetMHCIIpan binary, using install_netmhc2pan_bin

• Install the NetMHCIIpan data, using install_netmhc2pan_data

• Set up NetMHCIIpan, using set_up_netmhc2pan

Value

Nothing

Author(s)

Richèl J.C. Bilderbeek