plot_netassoc_matrix {netassoc} | R Documentation |
Plots matrix with colormap
Description
Plots species x species or species x site matrix with color map
Usage
plot_netassoc_matrix(data,
colors, onesided=FALSE, main="",
legend=TRUE, axis=TRUE, title=TRUE, cex.axis=0.5)
Arguments
data |
Input matrix; assumed to have dimension names |
colors |
Vector of colors |
onesided |
If |
main |
Title of plot. |
legend |
If |
axis |
If |
title |
If |
cex.axis |
Expansion factor for axis labels. |
Value
None; used for the side effect of making a plot.
Examples
nsp <- 10
nsites <- 30
obs <- matrix(rpois(n=nsp*nsites,10),
nrow=nsp,ncol=nsites,
dimnames=list(paste("Species",1:nsp),paste("Site",1:nsites)))
plot_netassoc_matrix(obs, onesided=TRUE, col=heat.colors(5))
int <- matrix(rnorm(n=nsp^2),
nrow=nsp,ncol=nsp,
dimnames=list(paste("Species",1:nsp),paste("Species",1:nsp)))
plot_netassoc_matrix(int, onesided=FALSE,
col=colorRampPalette(c("red","white","blue"))(50))
[Package netassoc version 0.7.0 Index]