print.neat {neat}

Print method of neat

Description

print method for class "neat".

Usage

## S3 method for class 'neat'
print(x, nrows=10, ...)

Arguments

x

An object of class "neat"

nrows

Maximum number of results to print (default is 10). It can be either an integer number or "ALL"

...

Further arguments passed to or from other methods

Value

A dataframe showing the first nrows tests contained in a neat object.

Author(s)

Mirko Signorelli

References

Signorelli, M., Vinciotti, V., Wit, E. C. (2016). NEAT: an efficient network enrichment analysis test. BMC Bioinformatics, 17:352. Url: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-1203-6.

See Also

neat, plot.neat, summary.neat

Examples

A = matrix(0, nrow=7, ncol=7)
A[1,c(2,3)]=1; A[2,c(5,7)]=1;A[3,c(1,4)]=1;A[4,c(2,5,7)]=1;A[6,c(2,5)]=1;A[7,4]=1

labels = letters[1:7]
set1 = c('a','e')
set2 = c('c','g')
set3 = c('d','f')
alist = list('set 1' = set1, 'set 2' = set2)
blist = list('set 3' = set3)

test = neat(alist, blist, network=A, nettype='directed', nodes=labels, alpha=0.05)
print(test)