normalize_pools {nanostringr} | R Documentation |
Normalize data using common pools
Description
Normalize nanostring gene expression using common pools between two CodeSets.
Usage
normalize_pools(x, ref, x_pools, ref_pools, p = 3, weigh = TRUE)
Arguments
x |
target data |
ref |
reference data |
x_pools |
target pool samples |
ref_pools |
reference pool samples |
p |
number of pool sample sets. Defaults to 3. |
weigh |
logical; if |
Details
The target and reference expression samples, as well the target and reference pool samples all need to be specified. We recommend reweighing the target pool samples when calculating the average expression by the distribution of reference pools.
Value
normalized gene expression
Author(s)
Derek Chiu
[Package nanostringr version 0.4.2 Index]