cohort {nanostringr}R Documentation

NanoString Experiment Cohorts

Description

There were five different cohorts used in NanoString experiments.

Usage

hld.r

ovd.r

ovc.r

hlo.r

ovo.r

Format

An object of class data.frame with 232 rows and 77 columns.

An object of class data.frame with 133 rows and 261 columns.

An object of class data.frame with 133 rows and 29 columns.

An object of class data.frame with 40 rows and 71 columns.

An object of class data.frame with 133 rows and 138 columns.

Details

Each data object contains raw expression counts, so no normalization has been applied. The format is a data frame with genes as rows, samples as columns. Note that the first three columns contain gene metadata and are always labelled "Code.Class", "Name", and "Accession", and the rest are sample names. Hence, for the hld.r data, the raw counts are contained in 232 genes for 77 - 3 = 74 samples. The total number of samples is 74 + 258 + 26 + 68 + 135 = 561, which matches the number of rows in expQC, the expression QC data.

Source

See Table 1 of https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0153844 for details.

See Also

expQC


[Package nanostringr version 0.4.2 Index]