propred_nmer {mycobacrvR}

Epitope conservation prediction from Propred server information

Description

propred_nmer is a method to conservation of epitopes among orthologs from Propred server data

Usage

propred_nmer(epi_length)

Arguments

epi_length

A character vector of epitope length

Details

This function takes epitope length as input into epi_length object. Input data for this function is present in "/data_mycobacrvR/propred_out" directory, therefore set this directory as working directory before using this function. Propred server provide epitopes of epitope length 9. Therefore epi_length should be given as "9mer".

Value

propred_nmer() will write two files in the working directory. One file contains the information of epitope and the other file contains metadata for epitope showing orthologs of H37Rv

Author(s)

Deepika Kulshreshtha

Examples

## Not run: propred_nmer("9mer")
##Conservation of all 9mer epitopes from Propred server