netmhcWT_nmer {mycobacrvR}

Epitope conservation prediction from NetMHC server 3.0 using weight matrices

Description

netmhcWT_nmer is a method to conservation of epitopes among orthologs from NetMHC server 3.0 using weight matrices data

Usage

netmhcWT_nmer(epi_length)

Arguments

epi_length

A character vector of epitope length

Details

This function takes epitope length as input into epi_length object. Input data for this function is present in "/data_mycobacrvR/netmhcWT_out" directory, therefore set this directory as working directory before using this function. NetMHC server 3.0 provides epitopes by selecting window size of epitope length such as 8mer, 9mer, 10mer, 11mer. Therefore epi_length should be given as "10mer".

Value

netmhcWT_nmer() will write two files in the working directory. One file contains the information of epitope and the other file contains metadata for epitope showing orthologs of H37Rv

Author(s)

Deepika Kulshreshtha

Examples

## Not run: netmhcWT_nmer("10mer")
##Conservation of all 10mer epitopes from NetMHC server