bimas_nmer {mycobacrvR}

Epitope prediction from Bimas server information

Description

bimas_nmer is a method to predict conservation of epitopes among orthologs from Bimas server data

Usage

bimas_nmer(epi_length)

Arguments

epi_length

A character vector of epitope length

Details

This function takes epitope length as input into epi_length object. Input data for this function is present in "/data_mycobacrvR/bimas_out" directory, therefore set this directory as working directory before using this function. Bimas server provide epitopes by selecting window size of epitope length such as 8, 9 and 10. Therefore epi_length should be given as "10mer".

Value

bimas_nmer() will write two files in the working directory. One file contains the information of epitope and the other file contains metadata for epitope showing orthologs of H37Rv

Author(s)

Deepika Kulshreshtha

Examples

## Not run: bimas_nmer("10mer")
##Conservation of 10mer epitopes from Bimas server