SelectGeneSet {myTAI} | R Documentation |
Select a Subset of Genes in an ExpressionSet
Description
Select a subset of genes stored in the input ExpressionSet
.
Usage
SelectGeneSet(ExpressionSet, gene.set, use.only.map = FALSE)
Arguments
ExpressionSet |
a standard PhyloExpressionSet or DivergenceExpressionSet object. |
gene.set |
a character vector storing the gene ids for which gene expression profiles shall be visualized. |
use.only.map |
a logical value indicating whether instead of a standard |
Details
This function selects a subset of genes specified in gene.set
stored in the input ExpressionSet
and returns a subset ExpressionSet
.
This function is useful for studying the evolutionary properties of a subset of genes
stored in the ExpressionSet
.
Author(s)
Hajk-Georg Drost
See Also
PlotGeneSet
, PlotEnrichment
, DiffGenes
Examples
data(PhyloExpressionSetExample)
# receive a subset ExpressionSet for the fist 5 genes stored in
# the PhyloExpressionSetExample
SelectGeneSet(ExpressionSet = PhyloExpressionSetExample,
gene.set = PhyloExpressionSetExample[1:5, 2])
# get a gene subset using only a phylostratihraphic map
ExamplePSMap <- PhyloExpressionSetExample[ , 1:2]
SelectGeneSet(ExpressionSet = ExamplePSMap,
gene.set = PhyloExpressionSetExample[1:5, 2],
use.only.map = TRUE)
[Package myTAI version 0.9.3 Index]