sortByMutations {mutSignatures} | R Documentation |
Sort Data by Mutation Type.
Description
Reorder a mutationSignatures, mutationCounts, data.frame, or matrix object by sorting entries by mutation type.
Usage
sortByMutations(x)
Arguments
x |
an object storing mutation count data |
Details
This function is part of the user-interface set of tools included in mutSignatures. This is an exported function.
Value
an object of the same class as x, with entries sorted according to mutation types.
Author(s)
Damiano Fantini, damiano.fantini@gmail.com
References
More information and examples about mutational signature analysis can be found here:
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GitHub Repo: https://github.com/dami82/mutSignatures/
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More info and examples about the mutSignatures R library: https://www.data-pulse.com/dev_site/mutsignatures/
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Sci Rep paper, introducing mutS: https://www.nature.com/articles/s41598-020-75062-0/
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Oncogene paper, Mutational Signatures Operative in Bladder Cancer: https://www.nature.com/articles/s41388-017-0099-6
Examples
A <- data.frame(S1=1:5, S2=5:1, S3=1:5)
rownames(A) <- c("A[A>T]G", "A[C>G]G", "T[A>T]G", "T[C>G]T", "T[C>G]G")
mutSignatures::sortByMutations(A)