msigPlot {mutSignatures}

Method msigPlot.

Description

Generate standard plots using data from mutsignature-class objects.

Usage

msigPlot(x, ...)

## S4 method for signature 'mutationSignatures'
msigPlot(x, ...)

## S4 method for signature 'mutationCounts'
msigPlot(x, ...)

## S4 method for signature 'mutSignExposures'
msigPlot(x, ...)

Arguments

x

a mutSignatures object

...

additional parameters, including standard graphical parameters, as well as a set of class-specific arguments: * x is a mutationSignatures object: - signature, numeric; numeric index of the signature to display - main, string; title of the plot * x is a mutationCounts object - sample, numeric or string, i.e. the identifier or the index of the sample to be plotted - main, string, title of the plot * x is a mutSignExposures object - top, integer, the maximum number of samples to be plotted