extractXvarlinkData {mutSignatures}

Extract Variants from XvarlinkData.

Description

Extract Variants from data stored as XvarlinkData.

Usage

extractXvarlinkData(xvarLink_data)

Arguments

xvarLink_data

character vector, including mutation data embedded in XvarlinkData

Details

This function is part of the user-interface set of tools included in mutSignatures. This is an exported function.

Value

a data.frame including mutations as well as corresponding reference nucleotides.

Author(s)

Damiano Fantini, [e-mail]

References

More information and examples about mutational signature analysis can be found here:

1. GitHub Repo: https://github.com/dami82/mutSignatures/

2. More info and examples about the mutSignatures R library: https://www.data-pulse.com/dev_site/mutsignatures/

3. Sci Rep paper, introducing mutS: https://www.nature.com/articles/s41598-020-75062-0/

4. Oncogene paper, Mutational Signatures Operative in Bladder Cancer: https://www.nature.com/articles/s41388-017-0099-6

Examples

x <- mutSignatures:::getTestRunArgs("extractXvarlinkData")
y <- mutSignatures:::extractXvarlinkData(xvarLink_data = x)
y