QTL_select {mppR} | R Documentation |
QTL candidates selection
Description
Selection of QTL candidate positions.
Usage
QTL_select(Qprof, threshold = 3, window = 50, verbose = TRUE)
Arguments
Qprof |
Object of class |
threshold |
|
window |
|
verbose |
|
Details
The function select QTL positions that are above the given
threshold
per chromosome. Once a position has been selected, and
exclusion window
is set around that position. Positions falling into
that region will not be candidate anymore. The search continue until there
is no more candidate position above the threshold
.
Value
Return:
QTL |
|
References
This function is a modification of the QTL.reduce function coming from the Biometris pipepline.
RAP (R Analytical Pipeline) (V0.9.1) May 2011
Authors: Paul Eilers (1), Gerrit Gort (1), Sabine Schnabel (1), Lucia Gutierrez(1, 2), Marcos Malosetti(1), Joost van Heerwaarden, and Fred van Eeuwijk(1)
(1) Wageningen University and Research Center, Netherlands (2) Facultad de Agronomia, UDELAR, Uruguay
See Also
Examples
data(mppData)
SIM <- mpp_SIM(mppData)
QTL <- QTL_select(Qprof = SIM, threshold = 3)