| morph-package {morph} | R Documentation |
3D Segmentation of Voxels into Morphologic Classes
Description
Automatically segments a 3D array of voxels into mutually exclusive morphological elements. This package extends existing work for segmenting 2D binary raster data. A paper documenting this approach has been accepted for publication in the journal Landscape Ecology. Detailed references will be updated here once those are known.
Details
The DESCRIPTION file:
| Package: | morph |
| Type: | Package |
| Title: | 3D Segmentation of Voxels into Morphologic Classes |
| Version: | 1.1.0 |
| Date: | 2023-02-14 |
| Authors@R: | c( person("Tarmo K.", "Remmel", email = "remmelt@yorku.ca", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-6251-876X"))) |
| Maintainer: | Tarmo K. Remmel <remmelt@yorku.ca> |
| Description: | Automatically segments a 3D array of voxels into mutually exclusive morphological elements. This package extends existing work for segmenting 2D binary raster data. A paper documenting this approach has been accepted for publication in the journal Landscape Ecology. Detailed references will be updated here once those are known. |
| License: | GPL-3 |
| LazyData: | true |
| LazyDataCompression: | xz |
| Depends: | R (>= 4.1.0), rgl, reshape2, igraph, stringr |
| NeedsCompilation: | no |
| Repository: | CRAN |
| Packaged: | 2021-12-09 16:13:51 UTC; tarmo |
| Author: | Tarmo K. Remmel [aut, cre] (<https://orcid.org/0000-0001-6251-876X>) |
| Date/Publication: | 2023-02-14 09:45:00 UTC |
Index of help topics:
LEdemo Landscape Ecology Demo Data (3D Voxels)
arraytrim Trim excess white-space (0 planes) from a 3D
binary array.
morph-package 3D Segmentation of Voxels into Morphologic
Classes
morph3d Performs a morphological segmentation of a
binary 3D array
morph3dlinks An internal function that computes the spatial
neighbours for voxels. It is an internal
function called by morph3d() and not intended
to be called on its own.
morph3dplot A plot function that converts a 3D array of
voxels into an interactive rgl plot.
morph3dprep Prepare 3D voxel data for interactive 3D
plotting.
This package handles the segmentation of binary voxel data, provided as a numeric 3D array, into its constituent morphological classes. Each voxel is assigned to one of nine mutually exclusive morpholocal classes: outside, mass, skin, crumb, circuit, antenna, bond, void-volume, or void.
Author(s)
Tarmo K. Remmel [aut, cre] (<https://orcid.org/0000-0001-6251-876X>) Maintainer: Tarmo K. Remmel <remmelt@yorku.ca>
References
Remmel, T.K. 2022. Extending morphological pattern analysis to 3D voxels. Landscape Ecology 37(2):373-380.
See Also
See Also melt
Examples
# Need to provide some simple examples here.