coxmap {mmconvert}

Mouse genetic map based on Cox et al. doi:10.1534/genetics.109.105486, revised for mouse genome build 39.

Description

A data frame with rows being markers and six columns: marker name, chromosome, sex-averaged cM position, female cM position, male cM position, and build 39 basepair position.

Details

Genetic maps were re-estimated after reordering markers according to their position in mouse genome build 39. See https://github.com/kbroman/CoxMapV3. Markers were shifted so that 0 cM corresponds to 3 Mbp, using the chromosome- and sex-specific recombination rate. The maps are smoothed slightly to avoid intervals with 0 recombination.

Source

https://github.com/kbroman/CoxMapV3

Examples

data(coxmap)