R: Visualization Functions for SpCV Disc Method.

autoplot.ResamplingSpCVDisc {mlr3spatiotempcv}

R Documentation

Visualization Functions for SpCV Disc Method.

Description

Generic S3 plot() and autoplot() (ggplot2) methods to visualize mlr3 spatiotemporal resampling objects.

Usage

## S3 method for class 'ResamplingSpCVDisc'
autoplot(
  object,
  task,
  fold_id = NULL,
  plot_as_grid = TRUE,
  train_color = "#0072B5",
  test_color = "#E18727",
  repeats_id = NULL,
  show_omitted = FALSE,
  sample_fold_n = NULL,
  ...
)

## S3 method for class 'ResamplingRepeatedSpCVDisc'
autoplot(
  object,
  task,
  fold_id = NULL,
  repeats_id = 1,
  plot_as_grid = TRUE,
  train_color = "#0072B5",
  test_color = "#E18727",
  show_omitted = FALSE,
  sample_fold_n = NULL,
  ...
)

## S3 method for class 'ResamplingSpCVDisc'
plot(x, ...)

## S3 method for class 'ResamplingRepeatedSpCVDisc'
plot(x, ...)

Arguments

`object`	`⁠[Resampling]⁠` mlr3 spatial resampling object of class ResamplingSpCVBlock or ResamplingRepeatedSpCVBlock.
`task`	`⁠[TaskClassifST]/[TaskRegrST]⁠` mlr3 task object.
`fold_id`	`⁠[numeric]⁠` Fold IDs to plot.
`plot_as_grid`	`⁠[logical(1)]⁠` Should a gridded plot using via patchwork be created? If `FALSE` a list with of ggplot2 objects is returned. Only applies if a numeric vector is passed to argument `fold_id`.
`train_color`	`⁠[character(1)]⁠` The color to use for the training set observations.
`test_color`	`⁠[character(1)]⁠` The color to use for the test set observations.
`repeats_id`	`⁠[numeric]⁠` Repetition ID to plot.
`show_omitted`	`⁠[logical]⁠` Whether to show points not used in train or test set for the current fold.
`sample_fold_n`	`⁠[integer]⁠` Number of points in a random sample stratified over partitions. This argument aims to keep file sizes of resulting plots reasonable and reduce overplotting in dense datasets.
`...`	Passed to `geom_sf()`. Helpful for adjusting point sizes and shapes.
`x`	`⁠[Resampling]⁠` mlr3 spatial resampling object. One of class ResamplingSpCVBuffer, ResamplingSpCVBlock, ResamplingSpCVCoords, ResamplingSpCVEnv.

Details

This method requires to set argument fold_id and no plot containing all partitions can be created. This is because the method does not make use of all observations but only a subset of them (many observations are left out). Hence, train and test sets of one fold are not re-used in other folds as in other methods and plotting these without a train/test indicator would not make sense.

2D vs 3D plotting

This method has both a 2D and a 3D plotting method. The 2D method returns a ggplot with x and y axes representing the spatial coordinates. The 3D method uses plotly to create an interactive 3D plot. Set plot3D = TRUE to use the 3D method.

Note that spatiotemporal datasets usually suffer from overplotting in 2D mode.

Examples


if (mlr3misc::require_namespaces("sf", quietly = TRUE)) {
  library(mlr3)
  library(mlr3spatiotempcv)
  task = tsk("ecuador")
  resampling = rsmp("spcv_disc",
    folds = 5, radius = 200L, buffer = 200L)
  resampling$instantiate(task)

  autoplot(resampling, task,
    fold_id = 1,
    show_omitted = TRUE, size = 0.7) *
    ggplot2::scale_x_continuous(breaks = seq(-79.085, -79.055, 0.01))
}

[Package mlr3spatiotempcv version 2.3.1 Index]