sequence_reads_match_count {minSNPs}

sequence_reads_match_count

Description

sequence_reads_match_count look for the search sequences in reads and return the matches indexes and mean qualities

Usage

sequence_reads_match_count(search_sequence, reads, qualities)

Arguments

search_sequence

the search sequence to look for where '.' stands for any character.

reads

the sequences reads to search for.

qualities

the qualities of each bases in the reads.

Value

will return a list containing for each read: - count, mean_quality, indexes