read_fasta {minSNPs}

read_fasta

Description

read_fasta is used to read fasta file, implementation similar to seqinr, but much simpler and allow for spaces in sample name.

Usage

read_fasta(file, force_to_upper = TRUE, bp = SerialParam())

Arguments

file

file path

force_to_upper

whether to transform sequences to upper case, default to TRUE

bp

is the biocparallel backend, default to serialParam, most likely sufficient in most scenario

Value

Will return list of named character vectors.