process_kmer_result {minSNPs}

process_kmer_result

Description

process_kmer_result processes the KMER result from infer_from_combined

Usage

process_kmer_result(partial_result, search_table, min_match_per_read = 1, ...)

Arguments

partial_result

the result from infer_from_combined with only KMER

search_table

a dataframe with the following columns: - "id","type","sequence","strand","result","extra","match_ref_seq"

min_match_per_read

the minimum number of kmer matches in a read, discarding reads with less than this number

...

ignored

Value

a dataframe containing the following columns: - type, rank, result, reads_count, proportion_matched, pass_filter, proportion_scheme_found, details