identify_overlaps {minSNPs}

identify_overlaps

Description

identify_overlaps identify the overlapping SNPs in the sequences

Usage

identify_overlaps(position_reference, genome_position, prev, after)

Arguments

position_reference

the mapping of position in SNP matrix to reference genome

genome_position

the position of the SNP in the reference genome

prev

number of bases before the SNP included in the search string

after

number of bases after the SNP included in the search string

Value

a list containing 2 dataframes listing the bystander SNPs in the flanking sequence before and after the SNPs