full_merge {minSNPs}

full_merge

Description

full_merge is used to merge 2 fasta, where a position exist only in 1 of the fasta, the fasta without allele in that positions are given reference genome's allele at that position. **Doesn't work for large dataset, hence the need for full_merge_1**

Usage

full_merge(
  fasta_1,
  fasta_2,
  meta_1,
  meta_2,
  ref,
  bp = BiocParallel::MulticoreParam(),
  ...
)

Arguments

fasta_1

fasta read into memory to join

fasta_2

fasta read into memory to join

meta_1

meta file for 'fasta_1' denoting all positions of SNPs and position in reference genome

meta_2

meta file for 'fasta_2' denoting all positions of SNPs and position in reference genome

ref

name of the reference genome (needs to be in both fasta files)

bp

the BiocParallel backend

...

all other arguments

Value

merged fasta and meta