combine_search_string_result_from_files {minSNPs}

combine_search_string_result_from_files

Description

combine_search_string_result_from_files combine_search_string_result combines the search results from temp file generated from search_from_fastq_reads

Usage

combine_search_string_result_from_files(
  result_files,
  search_table,
  read_length_files = c(),
  append_to_current_result = NULL,
  bp = MulticoreParam()
)

Arguments

result_files

the output files from search_from_fastq_reads to combine

search_table

a dataframe with the following columns: - "id","type","sequence","strand","result","extra","match_ref_seq"

read_length_files

the read_length output files from search_from_fastq_reads

append_to_current_result

the fastq_search_result of result to append to

bp

BiocParallel backend to use for parallelization

Value

will return a fastq_search_result object containing read_lengths and a dataframe containing: - 'sequence', 'search_id', 'reads', 'raw_match', 'mean_qualities', 'indexes', 'id', 'type', 'strand', 'result', 'extra', 'match_ref_seq', 'n_reads'