cal_fn {minSNPs}

cal_fn

Description

cal_fn is used to check if the proportion of false negative fastas and metas are compatible.

Usage

cal_fn(pattern, goi, target)

Arguments

pattern

the pattern from generate_pattern

goi

the group of interest (names of isolates)

target

the target sequence(s)

Value

proportion: no. false negative/number of isolates