MRtest {midrangeMCP} | R Documentation |
Multiple comparison procedures to the means of a factor using the studentized range and midrange distributions.
Description
MRtest
applies the Means grouping based on midrange, Means Grouping
based on Range, Student-Newman-Keuls based on midrange and
Tukey based on midrange tests.
These are new tests for multiple comparisons proposed by the
authors (BATISTA, 2016), that are being published.
Usage
MRtest(
y,
trt = NULL,
dferror = NULL,
mserror = NULL,
replication = NULL,
alpha = 0.05,
main = NULL,
MCP = "all",
ismean = FALSE
)
Arguments
y |
Model (aov or lm), numeric vector containing the response variable or the mean of the treatments. |
trt |
Constant (y = model) or a vector containing the treatments. |
dferror |
Degrees of freedom of the Mean Square Error. |
mserror |
Mean Square Error. |
replication |
Number de repetitions of the treatments in the experiment.
For unbalanced data should be informed the harmonic mean of repetitions.
This argument should be informed only if |
alpha |
Significant level. The default is |
main |
Title of the analysis. |
MCP |
Allows choosing the multiple comparison test; the defaut is "all". This option will go perform all tests. However, the options are: the Means grouping based on midrange test ("MGM"), Means Grouping based on Range test ("MGR"), the Student-Newman-Keuls based on midrange test ("SNKM") and the Tukey based on midrange test ("TM"). |
ismean |
Logic. If |
Details
The MCP
argument allows you to choose various tests
of multiple comparisons at once. For example,
MCP = c("MGM", "MGR")
, and so on.
Value
MRtest
returns the print of a list of results. First,
the summary of y
. Second, the statistics
of the test chosen. And finally, the mean group results for each test.
If MRtest
function is stored
in an object, the results will be printed and
also stored in the object.
Examples
# Simulated data (completely randomized design)
# Response variable
rv <- c(100.08, 105.66, 97.64, 100.11, 102.60, 121.29, 100.80,
99.11, 104.43, 122.18, 119.49, 124.37, 123.19, 134.16,
125.67, 128.88, 148.07, 134.27, 151.53, 127.31)
# Treatments
treat <- factor(rep(LETTERS[1:5], each = 4))
# Anova
res <- anova(aov(rv~treat))
DFerror <- res$Df[2]
MSerror <- res$`Mean Sq`[2]
# Loading the midrangeMCP package
library(midrangeMCP)
# applying the tests
results <- MRtest(y = rv,
trt = treat,
dferror = DFerror,
mserror = MSerror,
alpha = 0.05,
main = "Multiple Comparison Procedure: MGM test",
MCP = c("MGM"))
# Other option for the MCP argument is "all". All tests are used.
results$Groups # Results of the tests
results$Statistics # Main arguments of the tests
results$Summary # Summary of the response variable
# Using the y argument as aov or lm model
res <- aov(rv~treat)
MRtest(y = res, trt = "treat", alpha = 0.05,
main = "Multiple Comparison Procedure: MGM test",
MCP = c("MGM"))
# For unbalanced data: It will be used the harmonic mean of
# the number of experiment replicates
# Using the previous example
rv <- rv[-1]
treat <- treat[-1]
res <- lm(rv~treat) # Linear model
# Multiple comparison procedure: MGR test
MRtest(y = res, trt = "treat", alpha = 0.05,
main = "Multiple Comparison Procedure: MGR test",
MCP = c("MGR"))
# Assuming that the available data are the averages
# of the treatments and the analysis of variance
# Analysis of Variance Table
# Response: rv
# Df Sum Sq Mean Sq F value Pr(>F)
# treat 4 4135.2 1033.80 14.669 4.562e-05 ***
# Residuals 15 1057.1 70.47
mean.treat <- c(100.87, 105.95, 117.62, 127.97, 140.30)
treat <- factor(LETTERS[1:5])
DFerror <- 15
MSerror <- 70.47488
replic <- 4
MRtest(y = mean.treat,
trt = treat,
dferror = DFerror,
mserror = MSerror,
replication = replic,
alpha = 0.05,
main = "Multiple Comparison Procedure: MGM test",
MCP = c("MGM"),
ismean = TRUE)