summary.umbrella {metaumbrella} | R Documentation |
Synthesize information of an object of class “umbrella” in a dataframe
Description
Synthesize information of an object of class “umbrella” in a dataframe
Usage
## S3 method for class 'umbrella'
summary(object, digits = 3, het_max = FALSE, ...)
Arguments
object |
an object of class “umbrella” |
digits |
an integer value specifying the number of decimal places for the rounding of numeric values. Default is 3. |
het_max |
a logical variable indicating whether additional information on heterogeneity should be printed ( |
... |
other arguments that can be passed to the function |
Details
Summary method for objects of class “umbrella”.
Value
All main results of an object of class “umbrella” are synthesized in a dataframe, with the results of each factors stored in their own row. Depending on the classification used, the dataframe returned include certain information presented below:
Factor | the name of the factor. |
Class | the class assigned during the stratification of evidence. |
n_studies | the number of independent studies included in the factor. |
total_n | the total number of participants included in the factor. |
n_cases | the number of cases included in the factor. |
n_controls | the number of controls included in the factor. |
measure | the measured used in the calculations. |
value | the value of the pooled effect size expressed in its original metric. Note that |
if a factor includes only one study, its effect size is used as the pooled effect size. | |
value_CI | the 95% confidence interval (CI) around the pooled effect size expressed |
in its original metric. Note that if a factor includes only one study, its 95% CI is | |
used as the pooled 95% CI. | |
eG | the value of the pooled effect size expressed in equivalent Hedges' g (eG). |
eG_CI | the 95% CI around the pooled effect size expressed in eG. |
eOR | the value of the pooled effect size expressed in equivalent Odds ratio (eOR). |
eOR_CI | the 95% CI around the pooled effect size expressed in eOR. |
p_value | the p-value of the pooled effect size. |
I2 | the inconsistency (I^2 ) value (calculated only if the number of studies in the |
meta-analysis is equal or larger to 2). | |
PI_eG | the 95% prediction interval (PI) expressed in eG (calculated only if the number |
of studies in the meta-analysis is equal or larger to 3). | |
PI_eOR | the 95% PI expressed in eOR (calculated only if the number of studies in the |
meta-analysis is equal or larger to 3). | |
PI_sign | whether the 95% PI includes the null value ("notnull" vs. "null"). |
egger_p | the p-value of the Egger's test for publication bias (calculated only |
if the number of studies in the meta-analysis is equal or larger to 3). | |
egger_sign | whether the p-value of the Egger's test is < .05 ("sig." vs. "ns"). |
ESB_p | the p-value of the test for excess of significance bias. |
ESB_sign | whether the p-value of the excess of significance test is < .05 ("sig." vs. "ns"). |
power_med | the power to detect a SMD of 0.5 at an alpha of .05 based on the number of |
cases and controls included in the meta-analysis (when IRR is used as effect size | |
measure, the number of cases and controls in this calculation is assumed to be equal to | |
half the total number of cases included in the meta-analysis). | |
power | present only in the 'Personalized' classification. |
- If the user did not use the 'power' criteria to stratify the evidence, this column | |
contains the power to detect a small effect size (SMD = 0.2), a moderate effect | |
size (SMD = 0.5) and a large effect size (SMD = 0.8) at an alpha of .05 based on | |
the number of cases and controls included in the meta-analysis. | |
- If the user used the 'power' criteria to stratify the evidence, this column contains | |
the power to detect the values entered by the user at an alpha of .05 based on the | |
number of cases and controls included in the meta-analysis. | |
JK_p | the largest p-value obtained in the jackknife leave-one-out meta-analysis (calculated |
only if the number of studies in the meta-analysis is equal or larger to 2) | |
JK_sign | whether the largest p-value in the jackknife meta-analysis is < .05 ("sig." vs. "ns") |
largest_CI_eG | the 95% CI of the largest study expressed in eG |
largest_CI_eOR | the 95% CI of the largest study expressed in eOR |
largest_sign | whether the 95% CI of the largest study includes the null value ("notnull" vs. |
"null") | |
rob | the percentage of participants included in studies at low risk of bias (calculated |
only if this information is indicated in the dataset) | |
amstar | the AMSTAR score of the meta-analysis (calculated only if this information is |
indicated in the dataset) | |
See Also
metaumbrella-package()
for the formatting of well-formatted datasets
umbrella()
for conducting calculations needed for an umbrella review
add.evidence()
for stratifying evidence in an umbrella review
Examples
### generate a summary of the results of an umbrella object
summary(umbrella(df.SMD))