| species_annot_fw {metaprotr} | R Documentation |
species_annot_fw
Description
Data containing the abundance of 15 species expressed in spectral counts and with functional annotation. Data generated from an Orbitrap Fusion Lumos Tribrid Mass Spectrometer. The dataset contains the metaproteomes from three extraction methods: i) "Q" for Qiagen, ii) "FW" for fecal waters, and iii) "Q_FW" for the mixture of Qiagen and fecal waters. Data generated in the context of the project Microbiome Rapid Access (Université Paris-Saclay).
Usage
data(species_annot_fw)
Format
A list of four elements defined as "spectral_count_object" with functional annotation, generated with the function "add_kegg"
- SC_subgroups
dataframe with 9 samples containing 15 especies with abundance expressed as spectral counts
- metadata
information related to the 9 samples from the experiment
- peptides_proteins
information related to each of the 1315 identified peptides
- type_object
character indicating the type of object