| fecal_waters {metaprotr} | R Documentation |
fecal waters
Description
Data containing the abundance of 474 metaproteins expressed in spectral counts. Data generated from an Orbitrap Fusion Lumos Tribrid Mass Spectrometer. The dataset contains the metaproteomes from three extraction methods: i) "Q" for Qiagen, ii) "FW" for fecal waters, and iii) "Q_FW" for the mixture of Qiagen and fecal waters. Data generated in the context of the project Microbiome Rapid Access (Université Paris-Saclay).
Usage
data(fecal_waters)
Format
A list of four elements defined as "spectral_count_object", generated with the function "getsc_specific"
- SC_subgroups
dataframe with 9 samples containing 474 subgroups or metaproteins with abundance expressed as spectral counts
- metadata
information related to the 9 samples from the experiment
- peptides_proteins
information related to each of the 1557 identified peptides
- type_object
character indicating the type of object