| export_robject {metaprotr} | R Documentation |
export_robject
Description
Exports one of the dataframes present in a "metaproteome_object" or in "spectral_count_object". The export extensions can be RDATA or RDS.
Usage
export_robject(entry_object, data_exported, format_data, force = FALSE)
Arguments
entry_object |
A "metaproteome_object" or a "spectral_count_object" with similar format to that generated with the functions "load_protspeps" or "getsc_specific", respectively. |
data_exported |
Character indicating the type of data to be exported from a "metaproteome_object" or a "spectral_count_object". The possible options are: i) "proteins", ii) "peptides", iii) "pepProts", iv) "spectral", v) "spectral_percent", vi) "metadata". |
format_data |
Character indicating the file extension, this can be either "RDATA" or "RDS". |
force |
Logic value set at FALSE by default in order to ask permission to create object in the workstation of the user. |
Value
A file with the extension "RDATA" or "RDS" containing the information from the selected dataframe from a "metaproteome_object" or a "spectral_count_object".
Examples
data(fecal_waters)
export_robject(fecal_waters, "pepProts", "rdata")
data(species_fw)
export_robject(species_fw, "spectral", "rds")