plot.sh {metan} | R Documentation |
Plot the Smith-Hazel index
Description
Makes a radar plot showing the individual genetic worth for the Smith-Hazel index
Usage
## S3 method for class 'sh'
plot(
x,
SI = 15,
radar = TRUE,
arrange.label = FALSE,
size.point = 2.5,
size.line = 0.7,
size.text = 10,
col.sel = "red",
col.nonsel = "black",
...
)
Arguments
x |
An object of class |
SI |
An integer (0-100). The selection intensity in percentage of the total number of genotypes. |
radar |
Logical argument. If true (default) a radar plot is generated
after using |
arrange.label |
Logical argument. If |
size.point |
The size of the point in graphic. Defaults to 2.5. |
size.line |
The size of the line in graphic. Defaults to 0.7. |
size.text |
The size for the text in the plot. Defaults to 10. |
col.sel |
The colour for selected genotypes. Defaults to |
col.nonsel |
The colour for nonselected genotypes. Defaults to |
... |
Other arguments to be passed from ggplot2::theme(). |
Value
An object of class gg, ggplot
.
Author(s)
Tiago Olivoto tiagoolivoto@gmail.com
Examples
library(metan)
vcov <- covcor_design(data_g, GEN, REP, everything())
means <- as.matrix(vcov$means)
pcov <- vcov$phen_cov
gcov <- vcov$geno_cov
index <- Smith_Hazel(means, pcov = pcov, gcov = gcov, weights = rep(1, 15))
plot(index)