pointsonfes {metadynminer}

Plot points for Nudged Elastic Band projected onto free energy surface

Description

'pointsonfes' plots points for free energy profile calculated by Nudged Elastic Band projected onto free energy surface.

Usage

pointsonfes(x, pch = NULL, cex = 1, bg = NULL, col = "red",
  lwd = 1)

Arguments

x

nebpath object.

pch

plotting 'character', i.e., symbol to use. See 'points'.

cex

character (or symbol) expansion: a numerical vector. This works as a multiple of 'par("cex")'.

bg

background (fill) color for the open plot symbols given by 'pch = 21:25'.

col

color code or name, see 'par'.

lwd

line width for drawing symbols see 'par'.

Examples

tfes<-fes(acealanme, imax=5000)
minima<-fesminima(tfes)
nebAD<-neb(minima, min1="A", min2="D", nsteps=20)
plot(minima)
pointsonfes(nebAD)