points.nebpath {metadynminer}

Plot points for Nudged Elastic Band

Description

'points.nebpath' plots points for free energy profile calculated by Nudged Elastic Band.

Usage

## S3 method for class 'nebpath'
points(x, pch = NULL, cex = 1, bg = NULL,
  col = "red", lwd = 1, ...)

Arguments

x

nebpath object.

pch

plotting 'character', i.e., symbol to use. See 'points'.

cex

character (or symbol) expansion: a numerical vector. This works as a multiple of 'par("cex")'.

bg

background (fill) color for the open plot symbols given by 'pch = 21:25'.

col

color code or name, see 'par'.

lwd

line width for drawing symbols see 'par'.

...

further arguments passed to or from other methods.

Examples

tfes<-fes(acealanme, imax=5000)
minima<-fesminima(tfes)
nebAD<-neb(minima, min1="A", min2="D", nsteps=20)
plot(nebAD)
points(nebAD)