plot.profiles {metadynminer} | R Documentation |
Plot free energy profile
Description
'plot.profiles' plots evolution of free energy differences between minima. They are colored by rainbow colors from the global one (blue) to the highest (red).
Usage
## S3 method for class 'profiles'
plot(x, which = NULL, ignoretime = FALSE,
xlim = NULL, ylim = NULL, main = NULL, sub = NULL, xlab = NULL,
ylab = NULL, col = NULL, asp = NULL, lwd = 1, axes = T, ...)
Arguments
x |
profiles object. |
which |
vector of indexes of profiles to be plotted (default all). |
ignoretime |
time in the first column of the HILLS file will be ignored. |
xlim |
numeric vector of length 2, giving the x coordinates range. |
ylim |
numeric vector of length 2, giving the y coordinates range. |
main |
an overall title for the plot: see 'title'. |
sub |
a sub title for the plot: see 'title'. |
xlab |
a title for the x axis: see 'title'. |
ylab |
a title for the y axis: see 'title'. |
col |
color code or name, see 'par'. |
asp |
the y/x aspect ratio, see 'plot.window'. |
lwd |
line width. |
axes |
a logical value indicating whether both axes should be drawn on the plot. |
... |
further arguments passed to or from other methods. |
Examples
tfes<-fes(acealanme, imax=5000)
minima<-fesminima(tfes)
prof<-feprof(minima)
plot(prof)