plot.nebpath {metadynminer} | R Documentation |
Plot Nudged Elastic Band
Description
'plot.nebpath' plots free energy profile calculated by Nudged Elastic Band.
Usage
## S3 method for class 'nebpath'
plot(x, xlim = NULL, ylim = NULL, main = NULL,
sub = NULL, xlab = "bin", ylab = "free energy", col = "red",
lwd = 1, asp = NULL, cex = 1, axes = T, ...)
Arguments
x |
nebpath object. |
xlim |
numeric vector of length 2, giving the x coordinates range. |
ylim |
numeric vector of length 2, giving the y coordinates range. |
main |
an overall title for the plot: see 'title'. |
sub |
a sub title for the plot: see 'title'. |
xlab |
a title for the x axis: see 'title'. |
ylab |
a title for the y axis: see 'title'. |
col |
color code or name, see 'par'. |
lwd |
line width for drawing symbols see 'par'. |
asp |
the y/x aspect ratio, see 'plot.window'. |
cex |
text expansion. |
axes |
a logical value indicating whether both axes should be drawn on the plot. |
... |
further arguments passed to or from other methods. |
Examples
tfes<-fes(acealanme, imax=5000)
minima<-fesminima(tfes)
nebAD<-neb(minima, min1="A", min2="D", nsteps=20)
plot(nebAD)
[Package metadynminer version 0.1.7 Index]