Singhdata {metaMA} | R Documentation |
Singh dataset
Description
Publicly available microarray dataset artificially split in 5 studies
Usage
data(Singhdata)
Format
List of 3 elements:
- esets
List of 5 data frames corresponding to 5 artificial studies, each with 12625 genes and 20 replicates (10 normal samples and 10 tumoral samples)
- classes
List of 5 numeric vectors with class memberships, one per study
- geneNames
Factor with 12625 levels corresponding to gene names
Source
These data are available on the website http://www.bioinf.ucd.ie/people/ian/. We considered 50 normal samples and 50 tumoral samples, leaving out the 2 last tumoral samples. Data are already normalized.
References
Singh, D., Febbo, P. G., Ross, K., Jackson, D. G., Manola, J., Ladd, C., Tamayo, P., Renshaw, A. A., D'Amico, A. V., Richie, J. P., Lander, E. S., Loda, M., Kantoff, P.W., Golub, T. R., and Sellers,W. R. (2002). Gene expression correlates of clinical prostate cancer behavior. Cancer Cell, 1(2). 203:209.
Examples
data(Singhdata)