oligo.freq {metaCluster}

Oligonucleotide Frequency

Description

This function will calculate oligonucleotide frequency of each sequence or contig from a FASTA file.

Usage

oligo.freq(fasta_file, f)

Arguments

fasta_file

Name of the fasta or multifasta file

f

Length of the oligonucleotide

Value

Frequency value of each oligonucleotide of length specified by the user

Author(s)

Dipro Sinha <[e-mail]>,Sayanti Guha Majumdar, Anu Sharma, Dwijesh Chandra Mishra

Examples

library(metaCluster)
freq <- oligo.freq(fasta_file = system.file("extdata/sample1.fasta", package = "metaCluster"),4)