mefaCrosstab {mefa} | R Documentation |
Cross Tabulate an Object of Class 'stcs'
Description
The function makes cross tabulation of an object of class 'stcs'. Similar to the table
function but handles specialities of the 'stcs' object class (i.e. removes 'pseudo species' created to indicate empty samples). This is used internally by the function mefa
to make 3 dimensional representation of the data.
Usage
mefaCrosstab(x, segment = FALSE, nested = FALSE, drop.zero = FALSE)
Arguments
x |
an object of class 'stcs'. |
segment |
logical, if |
nested |
logical, if |
drop.zero |
argument passed to the function |
Details
The cross tabulation of an object of class 'stcs' is made by the function xtabs
, whic accepts non-integer values too.
Value
It returs a matrix if segment = FALSE
or a list with matrices for the segments if segment = TRUE
.
Author(s)
P\'eter S\'olymos, solymos@ualberta.ca
References
S\'olymos P. (2008) mefa: an R package for handling and reporting count data. Community Ecology 9, 125–127.
S\'olymos P. (2009) Processing ecological data in R with the mefa package. Journal of Statistical Software 29(8), 1–28. doi:10.18637/jss.v029.i08
http://mefa.r-forge.r-project.org/
See Also
Examples
x <- data.frame(sample = LETTERS[c(1,1,2,2,3,4)],
species = c(letters[c(5,5,5,6,7)], "zero.pseudo"),
count = c(1,2,10,3,4,0), segment = letters[c(8,9,8,9,8,8)])
y <- stcs(x)
mefaCrosstab(y)
mefaCrosstab(y, segment = TRUE)
mefaCrosstab(y, segment = TRUE, nested = TRUE)
## Examples for non-integer data
y[1:5, 3] <- y[1:5, 3] + 0.123
mefaCrosstab(y)
mefaCrosstab(y, segment = TRUE)