| matrixcut {matrixcut} | R Documentation |
Calculates The Component Membership in a Sequence Similarity Matrix at a given Cutoff Value
Description
The function takes a square sequence similarity matrix and calculates those independent components in which the sequence similarity between the members is greater than a specified value (between 0 and 1). The result provied by the function is a list of species with their component membership.
Version 0.0.1. Author: Dr. Matthew Cserhati Email: csmatyi@protonmail.com March 19, 2023
Arguments
mx |
a square sequence similarity matrix |
cut |
a given cutoff value to calculate components for, default value = -1 |
Value
The inflection point: cutoff value for the optimal number of clusters
A list of the species together with their cluster membership.
References
Mullner. <ArXiv:1109.2378>
Cserhati, Carter. (2020, Journal of Creation 34(3):41-50), <https://dl0.creation.com/articles/p137/c13759/j34-3_64-73.pdf>
Examples
matrixcut(primates,0.8)
matrixcut(primates)