get_significant_results {mashr} | R Documentation |
Find effects that are significant in at least one condition
Description
Find effects that are significant in at least one condition
Usage
get_significant_results(m, thresh = 0.05, conditions = NULL, sig_fn = get_lfsr)
Arguments
m |
the mash result (from joint or 1by1 analysis) |
thresh |
indicates the threshold below which to call signals significant |
conditions |
which conditions to include in check (default to all) |
sig_fn |
the significance function used to extract significance from mash object; eg could be ashr::get_lfsr or ashr::get_lfdr. (Small values must indicate significant.) |
Value
a vector containing the indices of the significant effects, by order of most significant to least
Examples
simdata = simple_sims(50,5,1)
data = mash_set_data(simdata$Bhat, simdata$Shat)
m = mash(data, cov_canonical(data))
get_significant_results(m)
[Package mashr version 0.2.79 Index]