cjs_gamma {marked}

HMM Transition matrix functions

Description

Functions that compute the transition matrix for various models. Currently only CJS and MS models are included.

Usage

cjs_gamma(pars, m, F, T)

Arguments

pars

list of real parameter values for each type of parameter

m

number of states

F

initial occasion vector

T

number of occasions

Value

array of id and occasion-specific transition matrices - Gamma in Zucchini and MacDonald (2009)

Author(s)

Jeff Laake

References

Zucchini, W. and I.L. MacDonald. 2009. Hidden Markov Models for Time Series: An Introduction using R. Chapman and Hall, Boca Raton, FL. 275p.