loglike_hmm {mappoly} | R Documentation |
Multipoint log-likelihood computation
Description
Update the multipoint log-likelihood of a given map using the method proposed by Mollinari and Garcia (2019).
Usage
loglike_hmm(input.map, input.data = NULL, verbose = FALSE)
Arguments
input.map |
An object of class |
input.data |
An object of class |
verbose |
If |
Author(s)
Marcelo Mollinari, mmollin@ncsu.edu
References
Mollinari, M., and Garcia, A. A. F. (2019) Linkage analysis and haplotype phasing in experimental autopolyploid populations with high ploidy level using hidden Markov models, _G3: Genes, Genomes, Genetics_. doi:10.1534/g3.119.400378
Examples
hexa.map <- loglike_hmm(maps.hexafake[[1]])
hexa.map
[Package mappoly version 0.4.1 Index]