calc_prefpair_profiles {mappoly} | R Documentation |
Preferential pairing profiles
Description
Given the genotype conditional probabilities for a map, this function computes the probability profiles for all possible homolog pairing configurations in both parents.
Usage
calc_prefpair_profiles(input.genoprobs, verbose = TRUE)
Arguments
input.genoprobs |
an object of class |
verbose |
if |
Author(s)
Marcelo Mollinari, mmollin@ncsu.edu and Guilherme Pereira, g.pereira@cgiar.org
References
Mollinari M., Olukolu B. A., Pereira G. da S., Khan A., Gemenet D., Yencho G. C., Zeng Z-B. (2020), Unraveling the Hexaploid Sweetpotato Inheritance Using Ultra-Dense Multilocus Mapping, _G3: Genes, Genomes, Genetics_. doi:10.1534/g3.119.400620
Examples
## tetraploid example
w1 <- lapply(solcap.dose.map[1:12], calc_genoprob)
x1 <- calc_prefpair_profiles(w1)
print(x1)
plot(x1)
[Package mappoly version 0.4.1 Index]