coat {mand}

Coat Function

Description

This is a function for plotting an image. The analysis result can be overcoated on the template.

Usage

coat(
  x,
  y = NULL,
  pseq = NULL,
  xyz = NULL,
  col.x = gray(0:64/64),
  col.y = NULL,
  breaks.y = NULL,
  zlim.x = NULL,
  zlim.y = NULL,
  rownum = 5,
  colnum = NULL,
  plane = c("axial", "coronal", "sagittal", "all")[1],
  xlab = "",
  ylab = "",
  axes = FALSE,
  oma = rep(0, 4),
  mar = rep(0, 4),
  bg = "black",
  paron = TRUE,
  cross.hair = FALSE,
  chxy = NULL,
  color.bar = TRUE,
  regionplot = FALSE,
  atlasdataset = NULL,
  regionname = c("atlas", "stat")[1],
  regionlegend = FALSE,
  atlasname = "",
  ROIids = 1:9,
  ...
)

Arguments

x

image1. Base image.

y

image2 to be overcoated.

pseq

a vector plot sequence.

xyz

a vector position to be plotted.

col.x

a color vector for image1.

col.y

a color vector for image2.

breaks.y

a vector breaks value for y.

zlim.x

a vector plot limitation values for z of x.

zlim.y

a vector plot limitation values for z of y.

rownum

a numeric, the number of row for the plot.

colnum

a numeric, the number of colnum for the plot.

plane

a vector plot sequence.

xlab

a character for a label in the x axis.

ylab

a character for a label in the y axis.

axes

a logical. TRUE presents the axes.

oma

a vector for outer margin area.

mar

a vector for margin.

bg

a character for color of background.

paron

a logical. TRUE means par is used.

cross.hair

a logical.

chxy

a vector cross hair position to be plotted.

color.bar

a logical.

regionplot

a logical.

atlasdataset

a matrix or data.frame. colnames shold include "ROIid" and "ROIname".

regionname

a character.

regionlegend

a logical.

atlasname

a character.

ROIids

a vector

...

further arguments passed to or from other methods.

Details

coat requires a image array.

Examples

data(exbrain)
coat(exbrain)