pairmod {malani}

Find best performing pairs

Description

Combine each gene in initial set with all genes in the original set. Top npair pairs are selected to construct the Q matrix.

Usage

pairmod(X, LX, theta, npair = 10)

Arguments

X

Original gene expression data matrix. With G rows (number of genes) and S column (number of samples).

LX

Class labels.

theta

Initial gene set.

npair

Given a gene in initial set, top npair best performing pairs correspond to that gene are selected (Default is 10).

Value

Best (npair*G/20) performing pairs.